aFC-n

aFC-n is a multi-eQTL generalization of the allelic fold change (aFC) method for estimating regulatory effect sizes. We provide effect size estimates for GTEx tissues in a Zenodo repository.

GitHub • Zenodo • Paper

ANEVA

ANEVA (analysis of expression variation) quantifies genetic variation in gene dosage from allelic expression (AE) data in a population. ANEVA-DOT applies these variance estimates in a dosage outlier test for use in rare disease diagnostic pipelines.

ANEVA code • ANEVA-DOT code • Paper

Pantry

Pantry is a framework to efficiently generate diverse RNA phenotypes from RNA sequencing data and perform downstream integrative analyses with genetic data. We provide results for GTEx tissues and Geuvadis in a Zenodo repository, and a web portal for exploring the results.

Pantry Portal • GitHub • Zenodo • Paper

RatGTEx

RatGTEx provides gene expression, eQTL, and sQTL data for multiple rat tissues, with particular focus on the brain and applications to behavioral research in outbred rats.

RatGTEx Portal • Rat TWAS Hub • GitHub • Pilot paper • NIDA Center