Publications

Selected Publications

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Deshpande, Dhrithi; Chhugani, Karishma; Chang, Yutong; Karlsberg, Aaron; Loeffler, Caitlin; Zhang, Jinyang; Muszynska, Agata; Rotman, Jeremy; Tao, Laura; Martin, Lana S.; Balliu, Brunilda; Tseng, Elizabeth; Eskin, Eleazar; Zhao, Fangqing; Mohammadi, Pejman; Labaj, Pawel P; Mangul, Serghei

A comprehensive overview of computational tools for RNA-seq analysis Journal Article

In: arXiv.org, 2020.

Links | BibTeX | Tags: RNA-sequencing

Mohammadi, Pejman; Castel, Stephane E; Cummings, Beryl B; Einson, Jonah; Sousa, Christina; Hoffman, Paul; Donkervoort, Sandra; Jiang, Zhuoxun; Mohassel, Payam; Foley, Reghan A; others,

Genetic regulatory variation in populations informs transcriptome analysis in rare disease Journal Article

In: Science, 366 (6463), pp. 351–356, 2019.

Links | BibTeX | Tags: allelic expression, ANEVA, ANEVA-DOT, genetic variation, GTEx, Mendelian, noncoding regions, rare genetic variants, RNA-sequencing, tissue-specific

Castel, Stephane E; Mohammadi, Pejman; Chung, Wendy K; Shen, Yufeng; Lappalainen, Tuuli

Rare variant phasing and haplotypic expression from RNA sequencing with phASER Journal Article

In: Nature communications, 7 (1), pp. 1–6, 2016.

Links | BibTeX | Tags: allelic expression, phASER, RNA-sequencing